☆24Feb 26, 2023Updated 3 years ago
Alternatives and similar repositories for LFQbench
Users that are interested in LFQbench are comparing it to the libraries listed below
Sorting:
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated last week
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Feb 23, 2026Updated last week
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 9 years ago
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics☆18Oct 11, 2018Updated 7 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 3 months ago
- ☆28May 20, 2025Updated 9 months ago
- The repo for LFQ-Analyst☆30Aug 7, 2024Updated last year
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated last month
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆17Sep 7, 2023Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Feb 16, 2026Updated 2 weeks ago
- Computational analysis for mass spectrometry-based proteomics data☆20Feb 22, 2026Updated last week
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 8 months ago
- ☆38Feb 18, 2026Updated 2 weeks ago
- Deep learning framework for proteomics☆145Feb 19, 2026Updated last week
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Updated this week
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated last month
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago
- Analysis of co-fractionation MS datasets☆13Dec 7, 2021Updated 4 years ago
- ☆22Jun 28, 2021Updated 4 years ago
- mist R package files☆10May 5, 2025Updated 9 months ago
- Processing and analysis of proteomics data☆17Feb 26, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)☆12Aug 26, 2022Updated 3 years ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Feb 24, 2026Updated last week
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated 2 weeks ago
- Spectral library searching using approximate nearest neighbor techniques.☆48Feb 11, 2026Updated 3 weeks ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆30Jul 28, 2025Updated 7 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated this week
- ☆12Jan 29, 2026Updated last month
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 10 months ago