ManchesterBioinference / BranchedGPLinks
Branching Gaussian process
☆30Updated 2 years ago
Alternatives and similar repositories for BranchedGP
Users that are interested in BranchedGP are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- GrandPrix☆16Updated 6 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- ☆29Updated 2 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Updated 5 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 3 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- ☆82Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated 2 months ago
- A tutorial on NMFreg applied to cerebellum data.☆12Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆20Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆33Updated 4 years ago
- Deep exponential families for single-cell data.☆20Updated 10 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- ☆16Updated 3 years ago
- ☆100Updated 11 months ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆40Updated 3 weeks ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago