Jonyyqn / scMalignantFinderView external linksLinks
scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
☆17Dec 13, 2025Updated 2 months ago
Alternatives and similar repositories for scMalignantFinder
Users that are interested in scMalignantFinder are comparing it to the libraries listed below
Sorting:
- ☆13Sep 30, 2024Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- ☆10Jul 9, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- ☆12Apr 4, 2023Updated 2 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 2 months ago
- Construct Tumor Transition Zone Microenvironment☆53Jun 25, 2025Updated 7 months ago
- Pan-Cancer Single Cell Classifier☆83May 30, 2024Updated last year
- ☆10Apr 6, 2022Updated 3 years ago
- ☆11May 24, 2024Updated last year
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Jan 23, 2024Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆15Feb 28, 2025Updated 11 months ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 8 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- ☆13Jul 11, 2024Updated last year
- Methods for decontamination of single cell data☆56Feb 16, 2025Updated 11 months ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Apr 14, 2024Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 2 months ago
- Code used to process the data of the HBCA project☆32Feb 9, 2024Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 6 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 6 years ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆19Jan 28, 2025Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 2 months ago
- ☆16Mar 18, 2025Updated 10 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆23Sep 29, 2025Updated 4 months ago
- codes for article☆17Jan 14, 2026Updated last month
- ☆14Jun 10, 2025Updated 8 months ago
- This repository is for CellBin research group☆34Updated this week
- Python package with CLI for the analysis of single cell methylation data.☆18Oct 29, 2024Updated last year
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆25Dec 10, 2025Updated 2 months ago