scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
☆23May 13, 2026Updated 4 months ago
Alternatives and similar repositories for scMalignantFinder
Users that are interested in scMalignantFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 1, 2026Updated 3 months ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- ☆13Sep 30, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The single T cell annotation tool for scRNA-seq data☆29Apr 25, 2025Updated last year
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆25Jul 30, 2026Updated last month
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- ☆23Oct 23, 2023Updated 2 years ago
- Code used to process the data of the HBCA project☆35Feb 9, 2024Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆22Jul 22, 2025Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆23Oct 8, 2025Updated 11 months ago
- ☆18Dec 4, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year
- ☆14Mar 17, 2026Updated 6 months ago
- ☆28Jun 4, 2023Updated 3 years ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated last year
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 2 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Mar 12, 2026Updated 6 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Apr 23, 2024Updated 2 years ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Jan 16, 2026Updated 8 months ago
- ☆38Jun 4, 2024Updated 2 years ago
- ☆14Apr 4, 2023Updated 3 years ago
- codes for article☆18Jan 14, 2026Updated 8 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 7 months ago
- ☆11Jul 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆46Nov 26, 2025Updated 9 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆128Mar 19, 2026Updated 6 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆54Jul 9, 2026Updated 2 months ago
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆48Aug 26, 2026Updated 3 weeks ago
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last week