ArcInstitute / scRecounterLinks
Nextflow pipeline to re-process all public single-cell RNA-seq data
☆30Updated 2 months ago
Alternatives and similar repositories for scRecounter
Users that are interested in scRecounter are comparing it to the libraries listed below
Sorting:
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 7 months ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 5 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆14Updated 2 months ago
- ☆38Updated 2 weeks ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- ☆44Updated 10 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Molecular interactions inference from single-cell multi-omics data☆27Updated 3 weeks ago
- python implementation of the PAGE algorithm☆18Updated last year
- Interactive visualisation of CellphoneDB results☆10Updated 8 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 11 months ago
- ☆29Updated 4 months ago
- A python package for chromVAR☆30Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆39Updated this week
- scGRO-seq analyses codes☆13Updated last year
- ☆26Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- A Python package for gene network analysis☆32Updated 3 years ago