ArcInstitute / scRecounterLinks
Nextflow pipeline to re-process all public single-cell RNA-seq data
☆30Updated 3 months ago
Alternatives and similar repositories for scRecounter
Users that are interested in scRecounter are comparing it to the libraries listed below
Sorting:
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- scGRO-seq analyses codes☆13Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Summary statistics for repertoires☆17Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 4 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last month
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- ☆19Updated 2 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 weeks ago
- ☆29Updated 4 months ago
- ☆30Updated 5 months ago
- Universal Single-Cell Genomics Preprocessing package☆42Updated this week
- Network Visualization using both GUI and Programming☆29Updated 5 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 8 months ago
- ☆26Updated 5 months ago
- TF analysis from epigenetic and Hi-C data☆18Updated 6 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 6 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- Vaeda method for computational doublet annotation☆17Updated last year
- ☆44Updated last year
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆13Updated 11 months ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17Updated last year
- python implementation of the PAGE algorithm☆18Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 9 months ago