ArcInstitute / scRecounterLinks
Nextflow pipeline to re-process all public single-cell RNA-seq data
☆31Updated 7 months ago
Alternatives and similar repositories for scRecounter
Users that are interested in scRecounter are comparing it to the libraries listed below
Sorting:
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- ☆44Updated last year
- Universal Single-Cell Genomics Preprocessing package☆48Updated last week
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- A python package for chromVAR☆33Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- ☆27Updated 8 months ago
- scGRO-seq analyses codes☆13Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Interactive visualisation of CellphoneDB results☆11Updated last year
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated last week
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 4 months ago
- python implementation of the PAGE algorithm☆20Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- A fast dataloader for bigwig files made for machine learning☆29Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 7 months ago
- ☆36Updated 11 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- TF analysis from epigenetic and Hi-C data☆19Updated 10 months ago
- Fast motif matching in R☆46Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Updated 2 months ago
- scRNAseq integration with triplet neural networks☆41Updated this week
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- ☆29Updated 2 years ago