Nextflow pipeline to re-process all public single-cell RNA-seq data
☆37Jul 24, 2026Updated 2 months ago
Alternatives and similar repositories for scRecounter
Users that are interested in scRecounter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LLM agents for working with the SRA and associated bioinformatics databases.☆190Jul 24, 2026Updated 2 months ago
- Arc Virtual Cell Atlas☆622Sep 29, 2026Updated last week
- ☆55Mar 4, 2025Updated last year
- parallel differential expression for single-cell perturbation sequencing☆31Aug 26, 2026Updated last month
- ☆166Nov 6, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆33Jul 27, 2026Updated 2 months ago
- A performant scientific image visualization system.☆36Aug 5, 2026Updated 2 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- ☆63Jan 9, 2026Updated 9 months ago
- Convert TCR gene names☆15Dec 26, 2025Updated 9 months ago
- Reproduce analyses and baselines from the State paper☆18Jun 29, 2026Updated 3 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 4 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆41Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Oct 4, 2021Updated 5 years ago
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- Bring your single-cell data to life☆102Sep 28, 2026Updated last week
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆16Aug 15, 2024Updated 2 years ago
- The code for gene set analysis by accessing domain databases☆120Dec 25, 2025Updated 9 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- RNA-Seq workflow for Kids-First DRC☆12May 12, 2026Updated 4 months ago
- Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models☆21May 12, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆12Sep 7, 2023Updated 3 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- How research parasites can download your data!☆17Jul 24, 2025Updated last year
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆30Sep 6, 2024Updated 2 years ago
- Scripts to help get fastqs☆20May 13, 2026Updated 4 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 7 months ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- ☆22Apr 27, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆175Nov 23, 2025Updated 10 months ago
- Genome-in-a-Bottle stratifications for major references☆16Apr 28, 2025Updated last year
- Single-cell differential expression☆19Apr 23, 2026Updated 5 months ago
- ☆19Jul 30, 2022Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆23Apr 30, 2026Updated 5 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- ☆23Jan 20, 2021Updated 5 years ago