salmonteam / SalmonBlogResponseLinks
Response to blog post about Salmon
☆37Updated 8 years ago
Alternatives and similar repositories for SalmonBlogResponse
Users that are interested in SalmonBlogResponse are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆43Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- ☆22Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago