Alternatives and similar repositories for batchglm

Users that are interested in batchglm are comparing it to the libraries listed below

• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated last month
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• CHPGenetics / GMM-Demux
  ☆18Updated last year
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆22Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆44Updated 3 weeks ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 3 weeks ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• almaan / eggplant
  ☆22Updated 3 years ago
• cbg-ethz / dce
  Finding the causality in biological pathways
  ☆13Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated 2 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆31Updated 2 years ago
• greenelab / ccc
  ☆23Updated 9 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆19Updated 2 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆51Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 11 months ago
• cellatlas / human
  ☆44Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆32Updated last month
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆25Updated 7 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated 3 weeks ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago