Alternatives and similar repositories for batchglm:

Users that are interested in batchglm are comparing it to the libraries listed below

• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated this week
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆20Updated this week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• almaan / eggplant
  ☆21Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆41Updated 4 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 4 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 5 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆20Updated this week
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆42Updated 6 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 4 months ago
• laminlabs / bionty
  Registries for biological entities, coupled to public ontologies.
  ☆13Updated this week
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 2 years ago
• scverse / anndata-tutorials
  Use cases for anndata.
  ☆13Updated this week
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆88Updated last week
• ShobiStassen / PARC
  ☆42Updated 7 months ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 6 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated last month