cctsou / DIA-Umpire
Computational analysis for mass spectrometry-based proteomics data
☆11Updated 8 years ago
Alternatives and similar repositories for DIA-Umpire:
Users that are interested in DIA-Umpire are comparing it to the libraries listed below
- ☆24Updated 2 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Updated 8 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Automatically exported from code.google.com/p/mstoolkit☆27Updated 3 weeks ago
- Computational analysis for mass spectrometry-based proteomics data☆20Updated last year
- MS/MS prediction for peptides☆22Updated 4 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆17Updated last week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆41Updated 3 weeks ago
- pathway and network analysis for metabolomics☆40Updated 10 months ago
- PDV: an integrative proteomics data viewer☆46Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated last week
- ☆20Updated 3 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆9Updated 3 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆22Updated last week
- ☆13Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated last month
- Spectral library searching using approximate nearest neighbor techniques.☆42Updated 3 weeks ago
- A Python interface to proteomics data repositories☆34Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆44Updated 2 weeks ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 3 years ago
- ☆29Updated 7 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆29Updated last month
- An open-source Python package to unify raw MS data accession and storage.☆21Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated last week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated last month
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Updated 2 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆12Updated 8 months ago
- A tool for summarizing open search results☆16Updated last week