cctsou / DIA-UmpireView external linksLinks
Computational analysis for mass spectrometry-based proteomics data
☆11Apr 25, 2016Updated 9 years ago
Alternatives and similar repositories for DIA-Umpire
Users that are interested in DIA-Umpire are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/mstoolkit☆30Dec 1, 2025Updated 2 months ago
- Scoring functions to compare MS/MS spectra☆11Feb 22, 2017Updated 8 years ago
- A tool for summarizing open search results☆16Dec 19, 2025Updated last month
- Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData repres…☆12Oct 23, 2019Updated 6 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Nov 6, 2025Updated 3 months ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆13Feb 12, 2021Updated 5 years ago
- ☆24Feb 26, 2023Updated 2 years ago
- Open source Java framework to create, process and manage mixtures of exponential family☆14Aug 4, 2015Updated 10 years ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 10 months ago
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆14Sep 19, 2025Updated 4 months ago
- Robust statistical inference for quantitative LC-MS proteomics☆33Dec 6, 2022Updated 3 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆44Jan 14, 2026Updated last month
- Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.☆19Oct 23, 2025Updated 3 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142Nov 21, 2025Updated 2 months ago
- Deep learning framework for proteomics☆145Jan 30, 2026Updated 2 weeks ago
- PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics☆16Aug 11, 2022Updated 3 years ago
- Computational analysis for mass spectrometry-based proteomics data☆20May 24, 2025Updated 8 months ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆52Nov 18, 2021Updated 4 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 6 months ago
- Repository for mzIdentML and the corresponding examples☆26Jan 16, 2026Updated 3 weeks ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- The codebase of the OpenMS project☆563Updated this week
- modular & open DIA search☆103Updated this week
- ☆40Jan 20, 2026Updated 3 weeks ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- pymzML - an interface between Python and mzML Mass spectrometry Files☆182Feb 3, 2026Updated last week
- ☆27May 20, 2025Updated 8 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Updated this week
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆32Jan 10, 2023Updated 3 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated 3 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Apr 14, 2025Updated 10 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 2 months ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- ImageJ macro for microglia morphology analysis☆17Jan 13, 2026Updated last month
- HUPO-PSI mass spectrometry CV☆40Jan 30, 2026Updated 2 weeks ago