seasamgo / rescue
Bootstrap imputation for scRNAseq data
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for rescue
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆16Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 4 months ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 5 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- ☆16Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- scRNAseq integration with triplet neural networks☆39Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated 2 years ago
- ☆28Updated last year
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- ☆37Updated 8 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆41Updated 2 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆22Updated 6 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆18Updated 7 months ago
- benchmark for single-cell RNA-seq imputation methods☆23Updated 8 months ago
- ☆19Updated 3 years ago
- Regulatory networks with Direct Information in python☆38Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆16Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆34Updated 2 months ago