seasamgo / rescueLinks
Bootstrap imputation for scRNAseq data
☆12Updated 5 years ago
Alternatives and similar repositories for rescue
Users that are interested in rescue are comparing it to the libraries listed below
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- ☆38Updated this week
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆44Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆27Updated 6 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- ☆19Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- ☆29Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago