Bootstrap imputation for scRNAseq data
☆12Jul 18, 2020Updated 5 years ago
Alternatives and similar repositories for rescue
Users that are interested in rescue are comparing it to the libraries listed below
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- An algorithm for mapping cell state transitions.☆29Mar 3, 2023Updated 3 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated last year
- ☆15Feb 5, 2024Updated 2 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 8 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated 11 months ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- single-cell graph autoencoder☆25Oct 14, 2021Updated 4 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- Accurate and robust imputation of scRNA-seq data☆98Aug 21, 2019Updated 6 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- MERFISH decoding software☆26Aug 16, 2025Updated 6 months ago
- ☆61Jun 17, 2021Updated 4 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- ☆24Nov 6, 2021Updated 4 years ago
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 6 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Repository for the wireshark plugin development project of the AMOS 16 course☆10Jan 6, 2017Updated 9 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆32Jan 10, 2023Updated 3 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- ☆45Aug 13, 2024Updated last year
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated last year
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago