SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
☆13Aug 14, 2023Updated 2 years ago
Alternatives and similar repositories for bolotie
Users that are interested in bolotie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- VIGOR4☆22Aug 15, 2025Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated last month
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 6 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ☆21Apr 28, 2026Updated last week
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆39Apr 6, 2026Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆32Apr 26, 2026Updated 2 weeks ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 7 months ago
- Quality control for phylogenetic analyses☆13Apr 27, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jun 30, 2021Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- ☆26Oct 17, 2018Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated 3 weeks ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ARTIC SARS-CoV-2 workflow and reporting☆50Apr 25, 2025Updated last year
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- A tool for exploring large trees in the browser☆131Updated this week
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 7 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 5 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- ☆13May 27, 2025Updated 11 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114May 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆11Jan 6, 2023Updated 3 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 5 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Sep 22, 2022Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- ☆12May 6, 2022Updated 4 years ago