salzberg-lab / bolotieLinks
SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
☆13Updated 2 years ago
Alternatives and similar repositories for bolotie
Users that are interested in bolotie are comparing it to the libraries listed below
Sorting:
- Variant call verification☆16Updated 4 months ago
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Updated 9 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆14Updated 3 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- ☆20Updated last year
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Updated 4 years ago
- ☆14Updated 4 years ago
- Basecalling configuration prediction through FASTQ files☆21Updated 4 months ago
- ☆15Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆29Updated 3 weeks ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 9 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 11 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆26Updated last month
- Read contamination removal☆25Updated last year
- ☆12Updated 3 months ago
- ☆12Updated 3 months ago
- ☆17Updated 2 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 9 months ago
- transposable element typing pipeline☆19Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 5 months ago