Alternatives and similar repositories for bolotie:

Users that are interested in bolotie are comparing it to the libraries listed below

• farhat-lab / fast-lineage-caller
  ☆14Updated 3 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated last year
• dhelekal / CaveDive
  ☆17Updated 10 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆11Updated 10 months ago
• viralInformatics / VIGA
  ☆13Updated 6 months ago
• karubiotools / getSequenceInfo
  Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆14Updated 3 weeks ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 3 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated last week
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 7 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• SR-Martin / alvis
  ☆19Updated last year
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated 11 months ago
• amkram / shusher
  Private, browser-based placement of genome sequences on phylogenetic trees using UShER.
  ☆10Updated 5 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• piyuranjan / SNIKT
  Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…
  ☆17Updated 2 years ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆24Updated 3 weeks ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 2 months ago
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 8 months ago
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated 9 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆52Updated last week
• chrisruis / bammix
  Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures
  ☆13Updated 3 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• bo1929 / krepp
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆10Updated this week
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 6 months ago
• jordanlab / STing
  Ultrafast sequence typing and gene detection from NGS raw reads
  ☆20Updated 4 years ago
• kamimrcht / ELECTOR
  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
  ☆15Updated 3 years ago