Alternatives and similar repositories for bolotie

Users that are interested in bolotie are comparing it to the libraries listed below

• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 5 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• viralInformatics / VIGA
  ☆14Updated 5 months ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• kamimrcht / ELECTOR
  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads
  ☆15Updated 4 years ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆32Updated 2 weeks ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• amkram / shusher
  Private, browser-based placement of genome sequences on phylogenetic trees using UShER.
  ☆11Updated 11 months ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 5 years ago
• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆31Updated 5 months ago
• SushiLab / mVIRs
  ☆13Updated last year
• songlab-cal / swga2
  ☆17Updated 2 years ago
• refresh-bio / clusty
  ☆12Updated 5 months ago
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 5 months ago
• SR-Martin / alvis
  ☆20Updated last year
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 2 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆12Updated last year
• bacpop / unitig-caller
  Methods to determine sequence element (unitig) presence/absence
  ☆21Updated 10 months ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆35Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 9 months ago
• pg-space / panspace
  Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
  ☆12Updated this week
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 10 months ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago