Local Lineage and Monophyly Assessment
☆16Aug 5, 2021Updated 4 years ago
Alternatives and similar repositories for llama
Users that are interested in llama are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 10 months ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 5 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Process consensus file for COG-UK data☆13Sep 7, 2021Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆72Nov 6, 2025Updated 6 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated 2 years ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 5 months ago
- ☆51Mar 11, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Apr 25, 2024Updated 2 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 8 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ☆10Apr 16, 2025Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 6 years ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Updated this week
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for exploring large trees in the browser☆131Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆453Apr 7, 2026Updated last month
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 2 years ago
- ☆74Jan 23, 2024Updated 2 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ultrafast Sample Placement on Existing Trees☆140Apr 29, 2026Updated last week
- ☆21Feb 12, 2026Updated 2 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 9 months ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆259Dec 13, 2025Updated 4 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago