cov-lineages / llamaLinks
Local Lineage and Monophyly Assessment
☆16Updated 4 years ago
Alternatives and similar repositories for llama
Users that are interested in llama are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆19Updated 10 months ago
- Read contamination removal☆25Updated last year
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- ☆17Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 3 months ago
- Systematic ProtEin AnnotatoR☆19Updated 9 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- ☆14Updated 5 years ago
- ☆26Updated 2 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Fast viral consensus genome reconstruction☆23Updated last month
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- map Illumina metagenomes to genomes!☆39Updated last month
- Northern Arizona SNP Pipeline☆19Updated 9 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆19Updated 8 years ago