cov-lineages / llamaLinks
Local Lineage and Monophyly Assessment
☆16Updated 4 years ago
Alternatives and similar repositories for llama
Users that are interested in llama are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆19Updated last year
 - Read contamination removal☆25Updated last year
 - Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
 - Systematic ProtEin AnnotatoR☆19Updated last month
 - Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 2 weeks ago
 - ☆18Updated last year
 - A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
 - Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
 - Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
 - MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆30Updated last year
 - Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
 - Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
 - Classify sequencing reads using MinHash.☆48Updated 5 years ago
 - Tool for analysing viral diversity from High Throughput Sequencing☆12Updated 2 years ago
 - Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
 - 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated last month
 - Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
 - Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated this week
 - Find Unique genomic Regions☆30Updated last week
 - An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
 - Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
 - Reference genome quality scores☆21Updated 4 years ago
 - Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
 - ☆26Updated 2 years ago
 - Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
 - reference free variant assembly☆34Updated 2 years ago
 - map Illumina metagenomes to genomes!☆38Updated last month
 - ☆18Updated 8 years ago
 - Influenza genome analysis Nextflow workflow☆23Updated last month
 - Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago