JordyCoolen / easyseq_covid19Links
Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.
☆15Updated 2 years ago
Alternatives and similar repositories for easyseq_covid19
Users that are interested in easyseq_covid19 are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 years ago
- ☆31Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- ☆26Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- ☆26Updated last year
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆48Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆38Updated 3 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 10 months ago
- Recombination-free trees☆58Updated 3 months ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Pan-Genomic Matching Statistics☆52Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago