ibest / ARCLinks
Assembly by Reduced Complexity (ARC)
☆42Updated 9 years ago
Alternatives and similar repositories for ARC
Users that are interested in ARC are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- genomic alignment similarity search tool☆18Updated 5 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- GATB Minia assembly pipeline☆31Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago