ibest / ARC
Assembly by Reduced Complexity (ARC)
☆41Updated 8 years ago
Alternatives and similar repositories for ARC:
Users that are interested in ARC are comparing it to the libraries listed below
- genomic alignment similarity search tool☆19Updated 8 months ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- ☆32Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- ☆26Updated 3 years ago
- Conditional Reciprocal Best Blast☆41Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 3 weeks ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- ☆12Updated 3 years ago
- A box of genomics tools☆21Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆26Updated 6 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago