ndaniels / MICA
MIcrobiomes using Compressive Acceleration
☆17Updated 6 years ago
Alternatives and similar repositories for MICA:
Users that are interested in MICA are comparing it to the libraries listed below
- Real time data analysis tools for the minION sequencing platform.☆30Updated 2 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 9 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- A 3'-end adapter contaminant trimmer☆92Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Tools for bam file processing☆55Updated 9 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago