ndaniels / MICA
MIcrobiomes using Compressive Acceleration
☆17Updated 7 years ago
Alternatives and similar repositories for MICA:
Users that are interested in MICA are comparing it to the libraries listed below
- a pileup library that embraces the huge☆42Updated 4 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Updated 3 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆57Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- ☆37Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A Better Sequencing Simulator for Metagenomics☆20Updated 5 years ago
- Code for nanopore paper☆33Updated 9 years ago