ndaniels / MICALinks
MIcrobiomes using Compressive Acceleration
☆17Updated 7 years ago
Alternatives and similar repositories for MICA
Users that are interested in MICA are comparing it to the libraries listed below
Sorting:
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Updated 3 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 7 months ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- A Better Sequencing Simulator for Metagenomics☆20Updated 5 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆64Updated 8 months ago
- Sequences from HIV Easily Reconstructed☆28Updated last year
- LAMBDA – the Local Aligner for Massive Biological DatA☆81Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Genome inference from a population reference graph☆96Updated 6 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 10 months ago
- ☆73Updated 6 years ago
- k-mer counting software☆39Updated 3 years ago