metalhelix / pipetteLinks
variant discovery and annotation using GATK and Ensembl
☆17Updated 12 years ago
Alternatives and similar repositories for pipette
Users that are interested in pipette are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- ☆43Updated 9 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- sort genomic data☆35Updated 5 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆70Updated 2 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- A Better Sequencing Simulator for Metagenomics☆20Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags