DennisSchmitz / Jovian_archiveLinks
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
☆18Updated 2 years ago
Alternatives and similar repositories for Jovian_archive
Users that are interested in Jovian_archive are comparing it to the libraries listed below
Sorting:
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- ☆26Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- Find Unique genomic Regions☆32Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 2 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated this week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- ☆29Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago