A SARS-CoV-2 Mutation Pattern Query Tool
☆17Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for vdb
Users that are interested in vdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 6 months ago
- ☆23Mar 5, 2025Updated last year
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- Pipeline to build a massive tree from global data☆11Jul 25, 2024Updated 2 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ultrafast identification of signature sequences in microbial genomes☆26Updated this week
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- ☆25Jun 25, 2024Updated 2 years ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 4 months ago
- Ultrafast Sample Placement on Existing Trees☆141Jun 1, 2026Updated 4 months ago
- ☆16Oct 29, 2025Updated last year
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆138Oct 19, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 6 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 6 months ago
- Lightweight genome browser for microbial genomes☆11Sep 24, 2026Updated last month
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- A tool for exploring large trees in the browser☆134Oct 7, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago
- Depth-weighted De-Mixing☆134Updated this week
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- ☆12Feb 15, 2023Updated 3 years ago
- snipit: summarise snps relative to your reference sequence☆179Jan 13, 2026Updated 9 months ago
- Population Genomics in R workshop☆13Mar 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 6 months ago
- Workflow for RSV analyses on Nextstrain.org☆11Updated this week
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 3 years ago
- viral-ngs: command line tools and wrappers for processing raw viral genomic data☆197Updated this week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated 4 months ago