variant-database / vdb
A SARS-CoV-2 Mutation Pattern Query Tool
☆17Updated 2 years ago
Alternatives and similar repositories for vdb
Users that are interested in vdb are comparing it to the libraries listed below
Sorting:
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated 3 weeks ago
- ☆52Updated 4 years ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Split Kmer Analysis☆64Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- ☆35Updated last month
- all methods related to Enterobase☆42Updated 8 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆19Updated last year
- SeqSero2☆35Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Recombination-free trees☆58Updated last month
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆34Updated 5 months ago
- Standard database for the TBProfiler tool☆29Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆24Updated last year
- whole genome MLST analysis☆42Updated last month
- Sorts amplicons from Nanopore sequencing data based on similarity☆37Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆52Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year