variant-database / vdbLinks
A SARS-CoV-2 Mutation Pattern Query Tool
☆17Updated 2 years ago
Alternatives and similar repositories for vdb
Users that are interested in vdb are comparing it to the libraries listed below
Sorting:
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- ☆37Updated 3 years ago
- ☆53Updated 4 years ago
- Split Kmer Analysis☆67Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- ☆37Updated 2 weeks ago
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- ☆30Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- all methods related to Enterobase☆44Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- SeqSero2☆39Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆24Updated 7 months ago
- Gene-flank analysis tool☆36Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated last week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago