Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
☆20Jun 26, 2022Updated 4 years ago
Alternatives and similar repositories for StrainHub
Users that are interested in StrainHub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- ☆13Sep 13, 2026Updated last month
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Material for a workshop on reproducible science with R and RStudio☆15May 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jan 20, 2022Updated 4 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 12 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Jul 6, 2020Updated 6 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated last month
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jun 30, 2021Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated 3 months ago
- ☆23Jul 5, 2026Updated 3 months ago
- BEAST+BEAGLE compiled with NVIDIA CUDA☆12Jul 19, 2024Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Fast viral consensus genome reconstruction☆27Sep 16, 2026Updated 3 weeks ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- ☆12Oct 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 3 months ago
- ☆19Dec 5, 2025Updated 10 months ago
- ☆10Aug 29, 2012Updated 14 years ago
- genetic distance plotting for recombination events analysis☆10Jul 14, 2026Updated 2 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- Phylogenetics between and within hosts at once, all along the genome.☆51Oct 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 6 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 4 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 10 months ago
- A scraper for bioRxiv☆12Apr 12, 2023Updated 3 years ago
- ☆23Dec 9, 2025Updated 10 months ago
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 6 years ago