abschneider / StrainHubLinks
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
☆17Updated 3 years ago
Alternatives and similar repositories for StrainHub
Users that are interested in StrainHub are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- Lecture on viral phylodynamics☆12Updated 4 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated 2 weeks ago
- ☆19Updated last year
- ☆18Updated 2 months ago
- Simple R utilities for working with HMMER☆19Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- ☆28Updated last year
- ☆19Updated 4 years ago
- Calculate distances between phylogenetic trees in R☆35Updated last month
- Estimating time trees from very large phylogenies☆28Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 4 months ago
- Reconstruction of transmission trees using genomic data☆69Updated 2 years ago
- R We There Yet?☆32Updated 9 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- ☆67Updated 9 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- An open database of vertebrate-virus interactions☆41Updated 2 weeks ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 6 months ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 6 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆12Updated 5 years ago