Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
☆17Jun 26, 2022Updated 3 years ago
Alternatives and similar repositories for StrainHub
Users that are interested in StrainHub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 10 months ago
- Material for a workshop on reproducible science with R and RStudio☆14May 22, 2022Updated 3 years ago
- ☆13Nov 26, 2025Updated 4 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 2 months ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Jul 6, 2020Updated 5 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 5 months ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆18Updated this week
- BEAST+BEAGLE compiled with NVIDIA CUDA☆12Jul 19, 2024Updated last year
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 5 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- genetic distance plotting for recombination events analysis☆10Feb 25, 2026Updated last month
- Phylogenetics between and within hosts at once, all along the genome.☆50Oct 2, 2024Updated last year
- R package to run BEAST2☆11Dec 8, 2025Updated 3 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- ☆22Dec 9, 2025Updated 3 months ago
- Python computational experiment management☆12Jul 21, 2022Updated 3 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 5 years ago
- US Wildfire Dashboard☆16Apr 3, 2023Updated 2 years ago
- ☆12Oct 11, 2022Updated 3 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Prediction pipeline to generate prognosis predictors for Ebola Virus Disease☆12Feb 22, 2016Updated 10 years ago
- ☆14Jun 30, 2021Updated 4 years ago