abschneider / StrainHubLinks
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
☆17Updated 3 years ago
Alternatives and similar repositories for StrainHub
Users that are interested in StrainHub are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated 4 months ago
- R We There Yet?☆32Updated 9 months ago
- Simple R utilities for working with HMMER☆19Updated last year
- Estimating time trees from very large phylogenies☆28Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 12 years ago
- Lecture on viral phylodynamics☆11Updated 4 years ago
- Calculate distances between phylogenetic trees in R☆35Updated last week
- Reconstruction of transmission trees using genomic data☆71Updated 2 years ago
- Tutorial on Bayesian phylogenetic analysis☆51Updated 8 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- ☆18Updated 3 months ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated 2 weeks ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- ☆68Updated 9 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 7 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Rapid analysis and visualization of coronavirus genome variation☆48Updated 2 weeks ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated last month
- K-mer Counting for Biological Sequence Analysis☆27Updated this week
- R Data Exploration for Serratus☆15Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago