guigolab / chip-nf
An automated ChIP-seq pipeline using Nextfow
☆17Updated 2 years ago
Alternatives and similar repositories for chip-nf:
Users that are interested in chip-nf are comparing it to the libraries listed below
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- See the main fork of this repository here >>>☆38Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 4 months ago
- iread☆23Updated 3 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 3 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆16Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆19Updated last year
- lncRNA-screen☆26Updated 7 years ago
- DriverPower☆26Updated this week
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Nextflow basic tutorial for newbie users☆32Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Mapped QC analysis program☆42Updated 6 years ago