guigolab / chip-nfLinks
An automated ChIP-seq pipeline using Nextfow
☆18Updated 2 years ago
Alternatives and similar repositories for chip-nf
Users that are interested in chip-nf are comparing it to the libraries listed below
Sorting:
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆16Updated 6 years ago
- Nextflow basic tutorial for newbie users☆33Updated 7 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 9 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Deep Variant as a Nextflow pipeline☆30Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 7 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month