cbg-ethz / ConsensusFixerLinks
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
☆18Updated 7 years ago
Alternatives and similar repositories for ConsensusFixer
Users that are interested in ConsensusFixer are comparing it to the libraries listed below
Sorting:
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Hitting associations with k-mers☆44Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Read contamination removal☆25Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- transposable element typing pipeline☆19Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago