cbg-ethz / ConsensusFixerLinks
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
☆18Updated 7 years ago
Alternatives and similar repositories for ConsensusFixer
Users that are interested in ConsensusFixer are comparing it to the libraries listed below
Sorting:
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆28Updated last month
- Hitting associations with k-mers☆45Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- ☆10Updated 12 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆14Updated last year
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- ☆26Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago