neherlab / nextalignLinks
đ§Ź Viral genome reference alignment
â12Updated 4 years ago
Alternatives and similar repositories for nextalign
Users that are interested in nextalign are comparing it to the libraries listed below
Sorting:
- Sequence Distance Graph framework: graph + reads + mapping + analysisâ26Updated 3 years ago
- exploring viral genome assembly with variation graph toolsâ20Updated 5 years ago
- mreps: software for tandem repeat identification in DNAâ15Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accessionâ13Updated 4 years ago
- â14Updated 5 years ago
- Library for visualising genomic features in Python.â15Updated 8 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mersâ22Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.â12Updated 6 years ago
- CLI to automate Nextflow pipeline testingâ12Updated last month
- Parallel implementation of the LAST alignerâ18Updated 8 years ago
- đś Genome assembly with short sequence readsâ26Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualitiesâ25Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligningâ21Updated 8 years ago
- Coronavirus (SARS-Cov-2) sequencing analysisâ10Updated 4 years ago
- kaamer - protein identification based on amino acid kmersâ12Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.â21Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequencesâ24Updated 2 months ago
- Variant call adjudicationâ16Updated last year
- Automatically exported from code.google.com/p/qsimscanâ13Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rustâ31Updated 8 months ago
- pathoscore evaluates variant pathogenicity tools and scores.â22Updated 3 years ago
- MEM mapper prototypeâ13Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.â12Updated 2 months ago
- Percentile-normalization method for correcting batch effects in case-control studiesâ12Updated 5 years ago
- A message queue for genomic surveillanceâ19Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxaâ25Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.â22Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFâŚâ11Updated 4 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshiftâ19Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)â10Updated last year