rpetit3 / vcf-annotator
Add biological annotations to variants in a given VCF file.
â28Updated 3 years ago
Alternatives and similar repositories for vcf-annotator:
Users that are interested in vcf-annotator are comparing it to the libraries listed below
- đ đŤ Trim, circularise and orient long read bacterial genome assembliesâ26Updated 5 years ago
- Output FASTQ summary statistics in JSON formatâ29Updated 2 years ago
- Influenza genome analysis Nextflow workflowâ23Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracksâ43Updated 5 months ago
- Find Unique genomic Regionsâ29Updated last week
- Influenza genome analysis Nextflow workflowâ18Updated last week
- Evaluating Nanopore-based bacterial variant callingâ15Updated last month
- Fast and space-efficient taxonomic classification of long readsâ43Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasetsâ28Updated 6 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS readsâ21Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long readsâ17Updated last year
- Nail is an Alignment Inference tooLâ43Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencingâ21Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaâ32Updated last month
- Influenza data pipeline to automate genotyping assignmentâ22Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisationâ34Updated 2 months ago
- A method of assessing sequence complexity based on kmer frequenciesâ30Updated 6 years ago
- Trimming tool for Oxford Nanopore sequence dataâ22Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataâ30Updated last month
- Bacterial GWAS analysisâ34Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fâŚâ30Updated 2 years ago
- SHOOT.bio - the phylogenetic search engineâ24Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomesâ38Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.â37Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesâ34Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformaticsâ17Updated 6 months ago
- Strain Resolution ON Graphsâ47Updated last year
- Genome size estimation from long read overlapsâ47Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.â48Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsâ27Updated last year