rpetit3 / vcf-annotatorLinks
Add biological annotations to variants in a given VCF file.
☆32Updated 4 years ago
Alternatives and similar repositories for vcf-annotator
Users that are interested in vcf-annotator are comparing it to the libraries listed below
Sorting:
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month
- ☆29Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 3 months ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- ☆26Updated 2 years ago
- A package to annotate protein sequences☆60Updated 10 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated 2 weeks ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Convert genbank files to a swath of other formats☆24Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆43Updated last year
- Remove human reads from a sequencing run☆46Updated 2 weeks ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 5 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 4 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago