ansariazim / treeBreakerLinks
Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
☆25Updated 7 years ago
Alternatives and similar repositories for treeBreaker
Users that are interested in treeBreaker are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Read contamination removal☆25Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆18Updated 8 years ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Main development repository for SpreadGL☆19Updated last year
- ☆18Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago