ansariazim / treeBreakerLinks
Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
☆25Updated 7 years ago
Alternatives and similar repositories for treeBreaker
Users that are interested in treeBreaker are comparing it to the libraries listed below
Sorting:
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆18Updated 8 years ago
- Read contamination removal☆25Updated last year
- Main development repository for SpreadGL☆19Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- ☆15Updated 7 years ago
- De novo VIral Genome Annotator☆23Updated last year
- C++ tools for NCBI taxonomy tasks☆11Updated 5 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Real-time species-typing visualisation for nanopore data.☆13Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago