mbhall88 / tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
☆11Updated 8 months ago
Alternatives and similar repositories for tbpore:
Users that are interested in tbpore are comparing it to the libraries listed below
- ☆13Updated 3 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Variant call verification☆16Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 5 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 weeks ago
- Generate basic stats for an assembly.☆10Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆10Updated 11 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- Read contamination removal☆24Updated last year
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 7 months ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 3 weeks ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated 11 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 4 months ago
- ☆13Updated 3 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆18Updated 9 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆11Updated this week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated 10 months ago
- Genome size estimation from long read overlaps☆48Updated 2 months ago