Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
☆14Jun 12, 2024Updated last year
Alternatives and similar repositories for tbpore
Users that are interested in tbpore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jan 8, 2026Updated 2 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- ☆14Jun 30, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 6 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13Jul 28, 2025Updated 8 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Reference-based consensus creation☆60Updated this week
- CRyPTIC data processing pipelines☆34Jul 18, 2024Updated last year
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Influenza genome analysis Nextflow workflow☆24Updated this week
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆19Dec 3, 2024Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆23Sep 12, 2024Updated last year
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 9 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Evaluating Nanopore-based bacterial variant calling☆22Jul 23, 2025Updated 8 months ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆15Mar 17, 2026Updated last week
- A simple pipeline for bacterial assembly and quality control☆16Mar 20, 2026Updated last week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 3 months ago
- ☆137Updated this week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆32Mar 23, 2026Updated last week
- course about NGS data processing: genomics and transcriptomics☆33Feb 14, 2026Updated last month
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- ☆13May 27, 2025Updated 10 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last month