Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
☆15Jun 5, 2026Updated 3 months ago
Alternatives and similar repositories for tbpore
Users that are interested in tbpore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Aug 10, 2026Updated 3 weeks ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- ☆15Jun 30, 2021Updated 5 years ago
- Profiling NTM WGS data☆19Updated this week
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated last month
- Reference-based consensus creation☆61Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CRyPTIC data processing pipelines☆36Jul 18, 2024Updated 2 years ago
- Variant call adjudication☆17Jun 13, 2024Updated 2 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- Interpretative standards for AMR genotypes☆30Aug 19, 2026Updated 2 weeks ago
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated last year
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Evaluating Nanopore-based bacterial variant calling☆23Jul 23, 2025Updated last year
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 6 months ago
- Customer workshop materials☆19May 13, 2026Updated 3 months ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 7 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆22Jun 1, 2026Updated 3 months ago
- ☆148Updated this week
- A simple pipeline for bacterial assembly and quality control☆17Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last month
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated last month