lsteuernagel / hypoMap_paperView external linksLinks
A public clone of the HypoMap Figure & analysis repository.
☆11Sep 26, 2022Updated 3 years ago
Alternatives and similar repositories for hypoMap_paper
Users that are interested in hypoMap_paper are comparing it to the libraries listed below
Sorting:
- ☆21Dec 23, 2024Updated last year
- ☆23Mar 29, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 7 years ago
- CellRank's reproducibility repository.☆16Jan 13, 2022Updated 4 years ago
- Killer tools/packages/libraries/websits/...☆20Feb 6, 2026Updated last week
- ☆19Sep 29, 2021Updated 4 years ago
- HCA data analysis☆19Mar 30, 2021Updated 4 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆21Jul 22, 2025Updated 6 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Feb 2, 2026Updated last week
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21May 19, 2025Updated 8 months ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆14Oct 23, 2024Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated last week
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 4 years ago
- ☆71May 28, 2025Updated 8 months ago
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 10 months ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆13Nov 24, 2025Updated 2 months ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆43Dec 16, 2024Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 9 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Jun 7, 2022Updated 3 years ago
- This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomi…☆44Feb 9, 2023Updated 3 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- ☆10Dec 4, 2023Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆48May 19, 2025Updated 8 months ago
- Cytograph version used for adult human-brain analysis☆96Jan 13, 2026Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Sep 20, 2024Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Mar 20, 2023Updated 2 years ago
- ☆12Dec 23, 2025Updated last month
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Single-cell genomic sequencing of the human gut microbiome☆12Jun 12, 2024Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 9 years ago