Alternatives and similar repositories for Patho-DBiT:

Users that are interested in Patho-DBiT are comparing it to the libraries listed below

• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• yqq-chen / CRC_ICB
  ☆29Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 11 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆36Updated 4 years ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆16Updated 3 weeks ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆15Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆25Updated 2 months ago
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆63Updated 6 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆42Updated 5 months ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆54Updated 2 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• satijalab / PASTA
  ☆19Updated 7 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆20Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆44Updated last month
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆46Updated 3 years ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆41Updated last year
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆41Updated 8 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆16Updated 9 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated last month
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆40Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• guangchunhan / LUAD_Code
  ☆18Updated last year