Alternatives and similar repositories for Patho-DBiT

Users that are interested in Patho-DBiT are comparing it to the libraries listed below

• yqq-chen / CRC_ICB
  ☆31Updated last year
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated last year
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆117Updated 10 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆107Updated 2 months ago
• Lan-lab / sc-GC
  ☆31Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆46Updated 3 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆57Updated 2 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆108Updated 3 months ago
• aliceygao / pan-Fibroblast
  ☆44Updated 11 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 3 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated 8 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆31Updated last year
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆74Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆81Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• navinlabcode / CellTrek
  ☆123Updated 3 years ago
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆83Updated 9 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆46Updated 3 weeks ago
• AllenInstitute / BICCN_M1_Evo
  Analysis for BICCN cross-species primary motor cortex project
  ☆23Updated last year
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated 3 weeks ago
• data2intelligence / CytoSig
  ☆53Updated 9 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆101Updated 10 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆82Updated last year
• MingyuYang-Yale / DBiT-seq
  ☆25Updated 4 months ago
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆30Updated 2 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆46Updated 3 months ago
• Core-Bioinformatics / MASLD-NASH
  scripts associated with NAFLD-NASH project
  ☆22Updated last year
• wagnerlab-berkeley / Compass
  ☆24Updated 3 months ago
• TiedemannLab / sciCNV
  Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution
  ☆13Updated 3 years ago