Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
☆16Aug 15, 2024Updated 2 years ago
Alternatives and similar repositories for Patho-DBiT
Users that are interested in Patho-DBiT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning notes for DBiT-Notes☆12Nov 28, 2024Updated last year
- ☆28Feb 25, 2025Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆104Feb 11, 2026Updated 6 months ago
- Analysis scripts for snMultiome project☆16Dec 12, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- ☆35Apr 8, 2023Updated 3 years ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- 单细胞最佳实践-中文版☆15Apr 6, 2023Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆18Feb 6, 2026Updated 7 months ago
- ☆19Sep 15, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆18Feb 10, 2023Updated 3 years ago
- ☆37Nov 29, 2021Updated 4 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 5 months ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated 3 weeks ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- ☆21May 6, 2025Updated last year
- Inferring CNV data from single cell ATAC seq☆28Jun 24, 2025Updated last year
- ☆55Aug 1, 2024Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 2 months ago
- ☆10Oct 24, 2024Updated last year
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆30Jul 17, 2026Updated last month
- The R package for SVM with GPU architecture based on the GTSVM software☆32Aug 4, 2021Updated 5 years ago
- Data analysis for the moscot-framework project☆25Feb 27, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 7 months ago
- ☆13Jun 17, 2023Updated 3 years ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated last year
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Nov 17, 2020Updated 5 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆36Jul 24, 2026Updated last month
- R functions underlying ExpressAnalyst☆14Aug 30, 2026Updated last week