buenrostrolab / dscATAC_analysis_codeLinks
Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
☆11Updated 5 years ago
Alternatives and similar repositories for dscATAC_analysis_code
Users that are interested in dscATAC_analysis_code are comparing it to the libraries listed below
Sorting:
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆23Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆18Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆17Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆27Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆12Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆49Updated last year
- ☆19Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆12Updated last year
- Scripts used to analyse EPICC ATAC-Seq data☆9Updated 2 years ago
- ☆12Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆15Updated 5 years ago
- ☆12Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- ☆15Updated 3 years ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago