buenrostrolab / dscATAC_analysis_code
Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
☆11Updated 5 years ago
Alternatives and similar repositories for dscATAC_analysis_code
Users that are interested in dscATAC_analysis_code are comparing it to the libraries listed below
Sorting:
- ☆49Updated 9 months ago
- ☆13Updated 10 months ago
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆33Updated last year
- ☆17Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆31Updated 3 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆11Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆17Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆16Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- ☆18Updated last year
- ☆19Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆12Updated 5 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- A pipeline for scRNA-seq data analysis☆14Updated last month