buenrostrolab / dscATAC_analysis_code
Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
☆11Updated 5 years ago
Alternatives and similar repositories for dscATAC_analysis_code:
Users that are interested in dscATAC_analysis_code are comparing it to the libraries listed below
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆49Updated 8 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- ☆17Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆27Updated 3 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- ☆17Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆33Updated last year
- ☆12Updated 5 years ago
- ☆32Updated 5 years ago
- ☆19Updated last year
- ☆30Updated 3 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆12Updated 9 months ago
- ☆12Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago