☆12May 8, 2025Updated 9 months ago
Alternatives and similar repositories for circRNAprofiler
Users that are interested in circRNAprofiler are comparing it to the libraries listed below
Sorting:
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Jan 31, 2026Updated last month
- ☆14Aug 31, 2016Updated 9 years ago
- ☆14Feb 21, 2024Updated 2 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 4 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆11Jul 25, 2025Updated 7 months ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 7 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆19Apr 24, 2025Updated 10 months ago
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- iread☆25Jul 16, 2021Updated 4 years ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- 使用表达数据,对候选基因进行特征选择,然后构建诊断/预后模型,并使用SHAP分析特征的贡献策划的怒☆14Oct 16, 2025Updated 4 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Jul 26, 2022Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 4 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 7 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 6 years ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆35Aug 9, 2019Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- ☆13May 27, 2025Updated 9 months ago
- ☆12Apr 5, 2022Updated 3 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- A tool for the calculation of RNA-editing index for RNA seq data☆45Jan 8, 2026Updated last month
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated last month