broadchenf / Slideseq

Related projects ⓘ

Alternatives and complementary repositories for Slideseq

• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆50Updated 5 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆21Updated last year
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• TencentAILabHealthcare / pysodb
  ☆22Updated 10 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆25Updated this week
• prabhakarlab / Banksy_py
  ☆34Updated 2 weeks ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆45Updated last week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated this week
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆15Updated 2 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated last month
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated 2 weeks ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 8 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 2 months ago
• blaineylab / OpticalPooledScreens
  ☆13Updated last year
• marcovito / sma
  ☆12Updated last year
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆24Updated last year
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated 7 months ago
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated last year
• theislab / multicpa
  ☆13Updated 2 years ago
• almaan / eggplant
  ☆20Updated 2 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 3 months ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆23Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆20Updated 3 years ago
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated last year
• walsh-quail-labs / IMC-Lung
  ☆16Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated last week