Alternatives and similar repositories for Slideseq

Users that are interested in Slideseq are comparing it to the libraries listed below

• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 6 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 3 weeks ago
• TencentAILabHealthcare / pysodb
  ☆27Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆64Updated 3 weeks ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated 2 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago
• theislab / interactive_plotting
  ☆22Updated 5 years ago
• BiomedicalMachineLearning / Spacell
  ☆27Updated 6 years ago
• scverse / spatialdata-notebooks
  ☆62Updated last week
• blaineylab / OpticalPooledScreens
  ☆15Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆27Updated 3 years ago
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 3 years ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated 4 months ago
• zcang / SpaOTsc
  ☆45Updated 5 months ago
• marcovito / sma
  ☆15Updated 2 years ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 4 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated 2 years ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated last month
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• theislab / scTab
  ☆61Updated last year
• wanglab-broad / mCNS-atlas
  ☆19Updated last year