Alternatives and similar repositories for Slideseq

Users that are interested in Slideseq are comparing it to the libraries listed below

• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 3 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated 3 weeks ago
• TencentAILabHealthcare / pysodb
  ☆28Updated 2 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 3 weeks ago
• theislab / interactive_plotting
  ☆22Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 7 months ago
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated 5 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated 2 years ago
• blaineylab / OpticalPooledScreens
  ☆15Updated 3 years ago
• yozhikoff / segmentation
  End-to-end pipeline for segmenting cell nuclei on histology slides
  ☆16Updated 3 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆12Updated 7 years ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• marcovito / sma
  ☆15Updated 2 years ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆18Updated 3 weeks ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated last year
• alexandrovteam / SpaceM
  ☆16Updated last year
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 3 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated this week
• walsh-quail-labs / IMC-Lung
  ☆21Updated 2 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆27Updated 3 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆52Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆19Updated last year
• MarioniLab / SpatialMouseAtlas2020
  Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
  ☆16Updated 2 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• pqiu / cooccurrence_clustering
  ☆14Updated 5 years ago