TcbfGroup / TcbfLinks
A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
☆16Updated 2 months ago
Alternatives and similar repositories for Tcbf
Users that are interested in Tcbf are comparing it to the libraries listed below
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆12Updated 10 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 2 years ago
- ☆17Updated 4 years ago
- Invertory of TE-gene isoforms☆11Updated last year
- ☆14Updated last year
- ☆15Updated 3 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆19Updated last month
- ☆27Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆16Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- ☆36Updated 2 years ago
- several scripts for bioinformatics☆23Updated 2 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 8 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- ☆12Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆11Updated 3 months ago
- conserved non-coding sequence☆14Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- ☆15Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago