Alternatives and similar repositories for bcd_nano_CUTnTag:

Users that are interested in bcd_nano_CUTnTag are comparing it to the libraries listed below

• wenweixiong / MARVEL
  ☆45Updated 7 months ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 3 months ago
• gxiaolab / scAllele
  ☆32Updated 10 months ago
• Henikoff / scCUT-Tag
  ☆15Updated last year
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆19Updated this week
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆11Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated 8 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 4 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆20Updated 5 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 3 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• cziegenhain / UMIcountR
  ☆16Updated 2 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆18Updated last year
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 3 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated last week
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 3 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆20Updated last month