mardzix / bcd_nano_CUTnTagLinks
☆12Updated last year
Alternatives and similar repositories for bcd_nano_CUTnTag
Users that are interested in bcd_nano_CUTnTag are comparing it to the libraries listed below
Sorting:
- ☆37Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 8 months ago
- Scripts used to analyse EPICC ATAC-Seq data☆9Updated 2 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- ☆17Updated 2 years ago
- ☆10Updated 3 weeks ago
- ☆49Updated last year
- Paired Insertion Counting for snATAC-seq data☆17Updated 2 months ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- python API to the CoGAPS NMF package☆19Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆23Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆32Updated 6 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆16Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 4 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Single-cell Case Control Analysis☆51Updated 9 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 4 months ago
- Code and data sharing of Liu et al. 2023 manuscript☆15Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆24Updated 2 months ago
- AD regulome analysis☆12Updated 2 years ago