HKU-BAL / Clair3-TrioLinks
Clair3-Trio: variant calling in trio using Nanopore long-reads
☆16Updated last year
Alternatives and similar repositories for Clair3-Trio
Users that are interested in Clair3-Trio are comparing it to the libraries listed below
Sorting:
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆21Updated last month
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- A tool to detect structural variant☆18Updated 2 years ago
- ☆16Updated 9 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆30Updated 6 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- ☆33Updated 2 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Updated 2 years ago
- This is the Haplotypo repository☆22Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 9 months ago
- A tool for simulating random mutations in any genome☆42Updated last year
- ☆35Updated last year
- Construct a Physical Map from Linked Reads☆18Updated last year
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Updated last month
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆25Updated last week
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Master of Pores 2☆23Updated 10 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- ☆26Updated 4 years ago
- Synteny Mapping and Analysis Program☆27Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Structural variant merging tool☆55Updated last year
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Updated 8 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year