Alternatives and similar repositories for Clair3-Trio:

Users that are interested in Clair3-Trio are comparing it to the libraries listed below

• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆14Updated 2 weeks ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆15Updated 7 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• HKU-BAL / SENSV
  A tool to detect structural variant
  ☆18Updated 2 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 4 months ago
• yekaizhou / duet
  SNP-Assisted SV Calling and Phasing Using ONT
  ☆24Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆32Updated 5 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated 3 weeks ago
• mcfrith / dnarrange
  ☆16Updated 2 months ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 10 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated last week
• vladimirsouza / lrRNAseqVariantCalling
  Codes for the Iso-Seq variant-calling paper
  ☆11Updated last year
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆22Updated last month
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 7 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆22Updated this week
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆50Updated last month
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆20Updated 9 months ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆43Updated 4 months ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆36Updated 9 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated last month