sarahhainer / uliCUT-RUN
Example scripts for analyzing CUT&RUN datasets
☆13Updated 6 years ago
Alternatives and similar repositories for uliCUT-RUN:
Users that are interested in uliCUT-RUN are comparing it to the libraries listed below
- ☆16Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆10Updated 3 years ago
- ☆49Updated 8 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ☆18Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- ☆18Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- ☆23Updated 3 years ago
- simplified cellranger for long-read data☆18Updated last week
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆16Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- ☆17Updated 4 years ago
- ☆15Updated 2 years ago