Example scripts for analyzing CUT&RUN datasets
☆13Oct 3, 2018Updated 8 years ago
Alternatives and similar repositories for uliCUT-RUN
Users that are interested in uliCUT-RUN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- ☆25May 14, 2021Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- Applying IDR analysis to Homer peaks.☆20May 8, 2020Updated 6 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Code for EpiMap data browser☆14Jun 4, 2024Updated 2 years ago
- ☆34Jul 20, 2018Updated 8 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆31Mar 15, 2024Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- ☆18May 12, 2023Updated 3 years ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆26Jan 20, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆24Mar 29, 2023Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆123Jan 15, 2023Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆79Jun 24, 2026Updated 4 months ago
- ☆27Oct 22, 2025Updated last year
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆15Mar 10, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆28Jul 26, 2023Updated 3 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Processing, quality control and analysis of GAM datsets☆10Jun 13, 2023Updated 3 years ago
- The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data☆11Feb 9, 2018Updated 8 years ago
- Proteomics analysis of IDH-mutant-noncodel gliomas reveals the mesenchymal subgroup enriched of gemistocytes with worse survival☆14Jun 4, 2026Updated 4 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆12Sep 8, 2021Updated 5 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The repo for LFQ-Analyst☆32Aug 7, 2024Updated 2 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Tutorial Website☆68Feb 1, 2021Updated 5 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- An R package of functions for single cell -omics analysis.☆11Jul 18, 2023Updated 3 years ago