MarioniLab / SpatialMouseAtlas2020Links
Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
☆16Updated 2 years ago
Alternatives and similar repositories for SpatialMouseAtlas2020
Users that are interested in SpatialMouseAtlas2020 are comparing it to the libraries listed below
Sorting:
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆39Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆34Updated 2 months ago
- ☆30Updated 3 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆12Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated last month
- ☆53Updated 2 years ago
- ☆13Updated last year
- ☆19Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- ☆14Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- benchmark for single-cell RNA-seq imputation methods☆28Updated last year
- ☆60Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- ☆18Updated 3 years ago
- ☆20Updated last month
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- ☆23Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year