Alternatives and similar repositories for dnamic

Users that are interested in dnamic are comparing it to the libraries listed below

• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆101Updated 4 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆117Updated last week
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• whhudson / spatialTCR
  ☆13Updated 3 years ago
• calico / solo
  software to detect doublets
  ☆94Updated 8 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆27Updated last year
• rajewsky-lab / spacemake
  ☆44Updated 3 weeks ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆54Updated this week
• ShobiStassen / VIA
  trajectory inference
  ☆104Updated 7 months ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆92Updated 6 months ago
• rajewsky-lab / novosparc
  ☆131Updated last year
• felixhorns / FlyPN
  Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)
  ☆20Updated 8 years ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 3 months ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• masai1116 / SHARE-seq-alignment
  pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
  ☆16Updated 3 years ago
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆49Updated 3 years ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆111Updated 11 months ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆94Updated 3 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆116Updated 4 months ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 6 years ago
• YosefLab / Cassiopeia
  A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
  ☆93Updated last month
• velocyto-team / velocyto.py
  RNA velocity estimation in Python
  ☆172Updated 4 months ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 4 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 6 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆74Updated last month
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆64Updated this week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆64Updated 2 months ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆45Updated 5 years ago