Alternatives and similar repositories for dnamic

Users that are interested in dnamic are comparing it to the libraries listed below

• calico / solo
  software to detect doublets
  ☆95Updated 10 months ago
• klarman-cell-observatory / hdst
  ☆19Updated 6 years ago
• rajewsky-lab / spacemake
  ☆45Updated this week
• masai1116 / SHARE-seq-alignment
  pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
  ☆16Updated 3 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆108Updated last week
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆86Updated 6 years ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆61Updated 2 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆106Updated 2 years ago
• velocyto-team / velocyto-notebooks
  ☆57Updated 7 years ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆98Updated 3 years ago
• hmatsu1226 / SCODE
  SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
  ☆45Updated 5 years ago
• whhudson / spatialTCR
  ☆13Updated 3 years ago
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆50Updated 3 years ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆94Updated 9 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆115Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 9 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆28Updated last year
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 11 months ago
• rajewsky-lab / novosparc
  ☆131Updated 2 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 6 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 5 months ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆139Updated last week
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆77Updated 2 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆122Updated 6 months ago
• chriscainx / mnnpy
  An implementation of MNN (Mutual Nearest Neighbors) correct in python.
  ☆75Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated 2 weeks ago
• lilab-bcb / harmony-pytorch
  ☆57Updated 5 months ago