dpeerlab / progressive-plasticity-crc-metastasisView external linksLinks
Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
☆17Dec 1, 2024Updated last year
Alternatives and similar repositories for progressive-plasticity-crc-metastasis
Users that are interested in progressive-plasticity-crc-metastasis are comparing it to the libraries listed below
Sorting:
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Jan 17, 2024Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆41Jun 24, 2025Updated 7 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Aug 18, 2025Updated 5 months ago
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- ☆17May 21, 2025Updated 8 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 weeks ago
- ☆33Jun 4, 2024Updated last year
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- ☆11Jul 18, 2025Updated 6 months ago
- Repo for my course PSY6135: Psychology of Data Visualization☆12May 3, 2025Updated 9 months ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆89Dec 8, 2022Updated 3 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆18Feb 18, 2021Updated 4 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 2 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- Codes used in pan-T cell analysis☆65Mar 13, 2023Updated 2 years ago
- ☆32Aug 24, 2022Updated 3 years ago
- ☆34Oct 22, 2025Updated 3 months ago
- ☆15Sep 12, 2023Updated 2 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆15Apr 23, 2024Updated last year
- ☆15Feb 28, 2022Updated 3 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Updated this week
- ☆13Jul 16, 2024Updated last year
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 7 years ago
- ☆12Mar 22, 2023Updated 2 years ago