Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
☆23Dec 1, 2024Updated last year
Alternatives and similar repositories for progressive-plasticity-crc-metastasis
Users that are interested in progressive-plasticity-crc-metastasis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Jun 4, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- ☆14Jul 16, 2024Updated 2 years ago
- Code for spatial subclone paper☆19Jan 23, 2025Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code repository for TCAT analyses☆17Sep 26, 2025Updated last year
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- ☆17Mar 10, 2026Updated 7 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated 2 weeks ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 10 months ago
- Use cases for anndata.☆14Aug 18, 2026Updated 2 months ago
- ☆38Jan 3, 2025Updated last year
- ☆33Feb 26, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆37Jan 23, 2024Updated 2 years ago
- Repo for my course PSY6135: Psychology of Data Visualization☆12May 3, 2025Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 3 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆12Aug 2, 2020Updated 6 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- Codes used in pan-T cell analysis☆69Mar 13, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆140Sep 6, 2024Updated 2 years ago
- ☆10Sep 26, 2019Updated 7 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆51Aug 18, 2025Updated last year
- ☆10Sep 2, 2024Updated 2 years ago
- Single-cell Colorectal Cancer Atlas with 4.27M cells☆24Aug 7, 2025Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 30, 2026Updated last month
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆24Sep 19, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Human Muscle Ageing Cell Atlas☆22Mar 8, 2024Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆101Dec 8, 2022Updated 3 years ago
- ☆15Sep 27, 2022Updated 4 years ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Tumor Immune Single-cell Hub☆23Aug 13, 2020Updated 6 years ago