HKU-BAL / MegaPath-NanoLinks
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
☆14Updated 3 years ago
Alternatives and similar repositories for MegaPath-Nano
Users that are interested in MegaPath-Nano are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆30Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Quality control plotting for long reads☆10Updated last year
- ☆14Updated 4 years ago
- Gene-flank analysis tool☆33Updated 11 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- ☆30Updated 2 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year