unique379r / strspyLinks
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
☆18Updated 4 months ago
Alternatives and similar repositories for strspy
Users that are interested in strspy are comparing it to the libraries listed below
Sorting:
- ☆13Updated 3 years ago
- ☆33Updated 3 years ago
- ☆14Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆35Updated 2 years ago
- Tandem repeat genotyping from long reads☆20Updated last week
- Population-wide Deletion Calling☆35Updated 8 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- ☆12Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- ☆32Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Updated 3 years ago
- ☆35Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- ☆16Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago