Alternatives and similar repositories for strspy

Users that are interested in strspy are comparing it to the libraries listed below

• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• wdecoster / STRdust
  Tandem repeat genotyping from long reads
  ☆17Updated 3 weeks ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆37Updated 6 months ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 4 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated last year
• UCSC-nanopore-cgl / margin
  ☆34Updated 2 years ago
• mcfrith / dnarrange
  ☆16Updated 9 months ago
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆32Updated last month
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated 2 years ago
• ACEnglish / usable_vcf
  Run multiple programs to check if a VCF is usable
  ☆11Updated 5 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 4 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 3 months ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated last year
• gjun / muCNV
  ☆20Updated last year
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated this week
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• dashnowlab / STRchive
  Short Tandem Repeat disease loci resource
  ☆23Updated last week
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year