unique379r / strspyLinks
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
☆18Updated last year
Alternatives and similar repositories for strspy
Users that are interested in strspy are comparing it to the libraries listed below
Sorting:
- ☆13Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Tandem repeat genotyping from long reads☆16Updated 3 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆31Updated 2 years ago
- ☆12Updated 3 years ago
- ☆14Updated last year
- Population-wide Deletion Calling☆35Updated 3 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- A python wrapper around SURVIVOR☆20Updated last year
- ☆16Updated 6 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 weeks ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Sample Contamination Estimate from VCF☆20Updated 8 months ago
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- Tandem repeat genotyping with long reads☆28Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 8 months ago
- ☆11Updated 2 years ago