Alternatives and similar repositories for digest

Users that are interested in digest are comparing it to the libraries listed below

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 2 months ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• Kingsford-Group / variantstore
  VariantStore: A Large-Scale Genomic Variant Search Index
  ☆39Updated 4 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 6 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• gjun / muCNV
  ☆20Updated 2 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 weeks ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 5 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆18Updated 3 months ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 5 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• mchaisso / mcutils
  ☆12Updated 4 months ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 4 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 8 years ago
• mcfrith / dnarrange
  ☆16Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 6 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• hlilab / hlilab.github.io
  ☆16Updated this week
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 3 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• FischerJo / FAME
  ☆14Updated 2 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Updated last year
• mlinderm / npsv
  Non-parametric structural variant genotyper
  ☆15Updated 4 years ago