VeryAmazed / digestLinks
☆15Updated 2 months ago
Alternatives and similar repositories for digest
Users that are interested in digest are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆9Updated 3 years ago
- ☆14Updated last year
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- ☆12Updated 3 months ago
- MEM mapper prototype☆13Updated 4 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Updated 4 years ago
- ☆20Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆25Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- ☆14Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago