☆17Aug 8, 2025Updated last year
Alternatives and similar repositories for digest
Users that are interested in digest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 6 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆47Aug 26, 2026Updated 3 weeks ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Jul 29, 2026Updated last month
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Sep 3, 2026Updated 2 weeks ago
- Fast and exact gap-affine partial order alignment☆71Updated this week
- Statistics and analysis for variation graphs☆53Dec 17, 2024Updated last year
- BWT construction and search☆131Aug 30, 2026Updated 3 weeks ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Jul 21, 2026Updated last month
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 2 months ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- 🔎 wheeler graph recognition algorithm, visualization and generation☆22Jun 28, 2026Updated 2 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Minipoa: A minimizer-based method for fast and memory-efficient partial order alignment☆19May 23, 2026Updated 3 months ago
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 9, 2026Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆109Sep 3, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics☆30Sep 9, 2024Updated 2 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆37Aug 31, 2026Updated 2 weeks ago
- Python language bindings for bwa☆12Jul 19, 2026Updated 2 months ago
- ☆13Oct 13, 2021Updated 4 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- Logan Unitigs and Contigs☆203Aug 29, 2026Updated 3 weeks ago