klarman-cell-observatory / perturbseqLinks
Perturb-seq analysis package
☆14Updated last year
Alternatives and similar repositories for perturbseq
Users that are interested in perturbseq are comparing it to the libraries listed below
Sorting:
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- scover☆23Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- ☆12Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆12Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- cfDNA analysis workflow☆21Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Updated 2 years ago
- ☆23Updated 8 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- ☆16Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- ☆18Updated last year
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- ☆28Updated 2 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- ☆12Updated 2 years ago