klarman-cell-observatory / perturbseq
Perturb-seq analysis package
☆14Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for perturbseq
- ☆26Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆12Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- scover☆22Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- Vaeda method for computational doublet annotation☆13Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆41Updated 3 months ago
- A gene expression signature scoring Python package.☆10Updated last year
- ☆20Updated last year
- Snakemake pipeline for microexon discovery and quantification☆19Updated last month
- Exon-Intron Split Analysis (EISA) in R☆15Updated 3 weeks ago
- ☆12Updated 3 years ago
- ☆12Updated 2 years ago
- Gene Expression Decomposition and Integration☆15Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆19Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated last week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- Analyzing chromatin accessibility data in R☆18Updated last year
- RNA velocity validation☆23Updated 2 years ago
- TRUST4 manuscript evaluation☆14Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago