klarman-cell-observatory / perturbseqView external linksLinks
Perturb-seq analysis package
☆16May 2, 2024Updated last year
Alternatives and similar repositories for perturbseq
Users that are interested in perturbseq are comparing it to the libraries listed below
Sorting:
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated last year
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Oct 3, 2017Updated 8 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Miscellaneous genomics tools and data structures☆15Jul 26, 2024Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 2 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- ☆12Nov 9, 2022Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- ☆12Sep 2, 2024Updated last year
- ☆12Apr 16, 2021Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Practical Bayesian Inference☆16Aug 7, 2018Updated 7 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 6 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 8 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- ☆17May 15, 2024Updated last year
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago