Perturb-seq analysis package
☆16May 2, 2024Updated 2 years ago
Alternatives and similar repositories for perturbseq
Users that are interested in perturbseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Variant impact phenotyping using Perturb-seq☆10Apr 22, 2024Updated 2 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆17Jun 2, 2022Updated 3 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Aug 2, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 7 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- ☆12Jan 8, 2026Updated 3 months ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆14May 8, 2020Updated 5 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Oct 3, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆15Mar 17, 2025Updated last year
- Miscellaneous genomics tools and data structures☆15Jul 26, 2024Updated last year
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An RNA pipeline built on top of ADAM. Apache 2 licensed.☆19Jan 19, 2018Updated 8 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆12Sep 2, 2024Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆76Feb 4, 2024Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ☆13Nov 9, 2022Updated 3 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago