rnabioco / clustifyrdataLinks
Reference data for cell-type assignment with clustifyr
☆13Updated 3 years ago
Alternatives and similar repositories for clustifyrdata
Users that are interested in clustifyrdata are comparing it to the libraries listed below
Sorting:
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- ☆55Updated 4 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 11 months ago
- ☆43Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Clone of the Bioconductor repository for the scran package.☆45Updated last year
- Normalize CITEseq Data☆66Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated last month
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 4 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago