Reference data for cell-type assignment with clustifyr
☆13Nov 3, 2022Updated 3 years ago
Alternatives and similar repositories for clustifyrdata
Users that are interested in clustifyrdata are comparing it to the libraries listed below
Sorting:
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 8 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 11 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- ☆11Jan 7, 2020Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Jun 4, 2019Updated 6 years ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- ☆13Mar 20, 2021Updated 5 years ago
- ☆19Apr 15, 2025Updated 11 months ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 3 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆14May 3, 2023Updated 2 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- Explore and share your scRNAseq clustering results☆50Sep 6, 2023Updated 2 years ago
- Sinab is not a browser.☆26Dec 2, 2020Updated 5 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- This is a repository of the scLinaX R package developed in the Tomofuji et al (Quantification of escape from X chromosome inactivation wi…☆10Sep 12, 2025Updated 6 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 4 months ago
- ☆16Oct 18, 2023Updated 2 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated last month
- miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis☆16Jun 29, 2025Updated 8 months ago
- ☆22Sep 17, 2025Updated 6 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- A rapido and lightweight method for PGS computation☆14Feb 19, 2025Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆212Jan 9, 2023Updated 3 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 11 months ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago