stephenslab / mashr-paperLinks
Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).
☆12Updated 8 years ago
Alternatives and similar repositories for mashr-paper
Users that are interested in mashr-paper are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Updated last year
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 3 months ago
- Independent Hypothesis Weighting☆15Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆25Updated 7 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 5 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆38Updated 2 months ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Single sample network reconstruction in R☆24Updated 5 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- Sample code for ldsc analyses in UKBB☆32Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 weeks ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 3 years ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- R package for computation of (adjusted) rand-index and other such scores☆27Updated 2 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago