stephenslab / mashr-paperView external linksLinks
Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).
☆12Sep 25, 2017Updated 8 years ago
Alternatives and similar repositories for mashr-paper
Users that are interested in mashr-paper are comparing it to the libraries listed below
Sorting:
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- Repo for Dynamic Statistical Comparisons project☆13Feb 5, 2024Updated 2 years ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆18Sep 13, 2018Updated 7 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Analysis code and results for dreamlet☆10Jul 18, 2025Updated 6 months ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 5 months ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 7 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- SKATE R Utilities☆10Jun 19, 2024Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 5 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 3 months ago
- R package for Empirical Bayes Factor Analysis.☆52Dec 4, 2024Updated last year
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 5 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- A faster and angrier package for EBMF.☆12Dec 10, 2025Updated 2 months ago
- An R package for adaptive shrinkage☆87Jul 24, 2025Updated 6 months ago
- An R interface for the ADMIXTOOLS software☆34Nov 24, 2025Updated 2 months ago
- Dynamic statistical comparisons in R☆17Jun 29, 2018Updated 7 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Plans and slides for a four-hour short course in intermediate Git.☆14Jul 2, 2017Updated 8 years ago
- ☆17Oct 3, 2022Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 8 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Oct 28, 2025Updated 3 months ago