stephenslab / mashr-paper
Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).
☆12Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for mashr-paper
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆23Updated last year
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Independent Hypothesis Weighting☆15Updated last year
- countsimQC - Compare characteristic features of count data sets☆27Updated last week
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆42Updated 6 months ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 5 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- This python package is for transitioning bioconductor from SVN to git☆14Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Archived version of RUVSeq☆8Updated 7 years ago