architverma1 / tGPLVMLinks
tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
☆17Updated 6 years ago
Alternatives and similar repositories for tGPLVM
Users that are interested in tGPLVM are comparing it to the libraries listed below
Sorting:
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆18Updated 3 years ago
- ☆16Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- ☆29Updated 2 years ago
- ☆21Updated last year
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 10 months ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆21Updated 8 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 7 months ago
- ☆28Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆18Updated 8 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago