yanailab / enhanceLinks
ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
☆14Updated 6 years ago
Alternatives and similar repositories for enhance
Users that are interested in enhance are comparing it to the libraries listed below
Sorting:
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆16Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- ☆11Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆37Updated last week
- ☆29Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 8 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 10 months ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- ☆12Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago