tarot0410 / BREMSCLinks
Novel joint clustering method with scRNA-seq and CITE-seq data
☆10Updated 4 years ago
Alternatives and similar repositories for BREMSC
Users that are interested in BREMSC are comparing it to the libraries listed below
Sorting:
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆16Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- A python package for calculating local cell specific networks☆17Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆15Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- Imputation of single cell sequencing data☆9Updated 4 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 8 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated last month
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 9 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- ☆31Updated 3 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- ☆16Updated 3 years ago
- Supervised cell type identification for scATAC-seq data☆13Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆11Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- CiteFuse:☆28Updated 2 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- ☆16Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆21Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Updated 3 years ago