tarot0410 / BREMSC
Novel joint clustering method with scRNA-seq and CITE-seq data
☆8Updated 3 years ago
Alternatives and similar repositories for BREMSC:
Users that are interested in BREMSC are comparing it to the libraries listed below
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆12Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 2 years ago
- A python package for calculating local cell specific networks☆16Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- Imputation of single cell sequencing data☆9Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆19Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆18Updated last year
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- code and dataset for spatialDWLS☆12Updated 3 years ago
- ☆16Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 5 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 5 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆9Updated 2 years ago
- ☆15Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago