churchill-lab / scBASELinks
A set of tools for accurate quantitation of single-cell allele-specific expression
☆12Updated 2 years ago
Alternatives and similar repositories for scBASE
Users that are interested in scBASE are comparing it to the libraries listed below
Sorting:
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ☆10Updated 6 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 3 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Pairwise Hierarchical Model☆19Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- ☆14Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- scover☆23Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year