churchill-lab / scBASELinks
A set of tools for accurate quantitation of single-cell allele-specific expression
☆12Updated 2 years ago
Alternatives and similar repositories for scBASE
Users that are interested in scBASE are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- scover☆23Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- ☆10Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ☆14Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- ☆17Updated last year
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- scRNA-seq data visualization from scrattch☆27Updated last month
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year