churchill-lab / scBASELinks
A set of tools for accurate quantitation of single-cell allele-specific expression
☆12Updated 2 years ago
Alternatives and similar repositories for scBASE
Users that are interested in scBASE are comparing it to the libraries listed below
Sorting:
- Pairwise Hierarchical Model☆19Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- ☆10Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆14Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- scover☆23Updated last year
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 months ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆9Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- ☆10Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago