churchill-lab / scBASELinks
A set of tools for accurate quantitation of single-cell allele-specific expression
☆12Updated 2 years ago
Alternatives and similar repositories for scBASE
Users that are interested in scBASE are comparing it to the libraries listed below
Sorting:
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- ☆10Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Archived version of RUVSeq☆8Updated 8 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Pairwise Hierarchical Model☆18Updated 3 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆19Updated 7 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 2 months ago
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 6 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year