Alternatives and similar repositories for SAFEclustering:

Users that are interested in SAFEclustering are comparing it to the libraries listed below

• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆15Updated 3 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 8 months ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago
• tarot0410 / BREMSC
  Novel joint clustering method with scRNA-seq and CITE-seq data
  ☆9Updated 3 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆37Updated 3 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• lanagarmire / NMFEM
  ☆15Updated 8 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 2 years ago
• simslab / cluster_diffex2018
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
  ☆21Updated 3 years ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• jingshuw / descend
  ☆16Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• WangShuxiong / SoptSC
  SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …
  ☆21Updated 4 years ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 2 years ago
• SUwonglab / scABC
  ☆20Updated 5 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• BaderLab / CCInx
  Build predicted cell-cell interaction networks from single-cell data.
  ☆9Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆27Updated last year
• sqjin / scAI
  An unsupervised approach for the integrative analysis of single-cell multi-omics data
  ☆29Updated 4 years ago
• csjansen / SOMatic
  SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.
  ☆14Updated 7 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 5 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆35Updated 4 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago