czbiohub-sf / tabula-muris-vignettesLinks
Examples analyses using the single-cell RNA-seq data from mouse cell atlases
☆22Updated 6 years ago
Alternatives and similar repositories for tabula-muris-vignettes
Users that are interested in tabula-muris-vignettes are comparing it to the libraries listed below
Sorting:
- A study to compare methods for clustering of scRNA-seq data☆44Updated last year
- ☆55Updated 11 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- ☆28Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- ☆16Updated 7 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 3 months ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 5 years ago
- ☆29Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- ☆21Updated 8 years ago
- Fast motif matching in R☆46Updated last year
- Normalization for single cell RNA-seq data☆50Updated 7 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Multi-omics studies are available here☆52Updated 3 years ago