czbiohub-sf / tabula-muris-vignettes
Examples analyses using the single-cell RNA-seq data from mouse cell atlases
☆23Updated 5 years ago
Alternatives and similar repositories for tabula-muris-vignettes:
Users that are interested in tabula-muris-vignettes are comparing it to the libraries listed below
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- ☆28Updated 6 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆16Updated 6 years ago
- ☆53Updated this week
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆38Updated 4 years ago
- ☆37Updated 8 years ago
- ☆35Updated 11 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- ☆53Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Fast motif matching in R☆45Updated last year
- An r package that works as a wrapper to homologene☆42Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 2 years ago
- Explore and share your scRNAseq clustering results☆48Updated last year
- post-clustering differential expression test☆35Updated 5 years ago
- ☆28Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago