czbiohub-sf / tabula-muris-vignettesLinks
Examples analyses using the single-cell RNA-seq data from mouse cell atlases
☆23Updated 6 years ago
Alternatives and similar repositories for tabula-muris-vignettes
Users that are interested in tabula-muris-vignettes are comparing it to the libraries listed below
Sorting:
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆28Updated 6 years ago
- ☆55Updated 7 months ago
- ☆29Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- ☆24Updated 7 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆16Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 weeks ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year