simon19891216 / SPDEv1.2
☆10Updated 3 years ago
Related projects: ⓘ
- An R package to infer and analyze synteny networks from protein sequences☆21Updated 5 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆23Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Hierarchical clustering of cgMLST☆10Updated 10 months ago
- finding conserved regions in highly diverse genomes☆15Updated last month
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆15Updated 3 months ago
- Yet another Hi-C scaffolding tool☆19Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- ☆15Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆33Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and R☆32Updated 4 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆19Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- A program for assessing the T2T genome continuity☆36Updated 3 weeks ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- ☆21Updated 4 years ago
- ☆14Updated this week
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆15Updated 8 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆14Updated 3 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- ☆23Updated 3 months ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆21Updated 2 years ago
- ☆16Updated 2 years ago