esteinig / netviewrLinks
Mutual nearest neighbor graphs for population structure inference and visualization
☆18Updated 2 weeks ago
Alternatives and similar repositories for netviewr
Users that are interested in netviewr are comparing it to the libraries listed below
Sorting:
- plot genome alignment synteny☆21Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 3 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- ☆16Updated 11 months ago
- ☆29Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆16Updated 2 years ago
- Study of TE evolution in a population of genomes☆10Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆25Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated this week
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆30Updated 6 months ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆27Updated 3 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆29Updated last month
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Updated 3 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- ☆31Updated 8 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 7 months ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Updated 6 years ago