Transposable Elements Representation Learner (TERL)
☆20Jun 2, 2025Updated 10 months ago
Alternatives and similar repositories for TERL
Users that are interested in TERL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 12, 2014Updated 11 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 4 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 3 months ago
- Transposon annotation tool "resonaTE" (part of TransposonUltimate)☆18Mar 4, 2022Updated 4 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 4 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 10 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- ☆10Mar 11, 2026Updated last month
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆114Updated this week
- ☆15Feb 1, 2023Updated 3 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Extensive de-novo TE Annotator☆439Apr 5, 2026Updated last week
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- High-precision TE Annotator☆152Dec 4, 2025Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85May 25, 2021Updated 4 years ago
- A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn☆28May 7, 2024Updated last year
- ☆119Oct 10, 2025Updated 6 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Neural network classification of TE☆98Apr 3, 2026Updated last week
- Transposon classification tools RFSB, part of TransposonUltimate☆14Mar 27, 2024Updated 2 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 9 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆23Jun 26, 2024Updated last year
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Mar 31, 2026Updated 2 weeks ago