Transposable Elements Representation Learner (TERL)
☆20Jun 2, 2025Updated 9 months ago
Alternatives and similar repositories for TERL
Users that are interested in TERL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 12, 2014Updated 11 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆107Nov 17, 2025Updated 4 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- Transposon annotation tool "resonaTE" (part of TransposonUltimate)☆18Mar 4, 2022Updated 4 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 9 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- ☆10Mar 11, 2026Updated 2 weeks ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113Mar 19, 2026Updated last week
- ☆15Feb 1, 2023Updated 3 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extensive de-novo TE Annotator☆435Mar 12, 2026Updated 2 weeks ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- High-precision TE Annotator☆151Dec 4, 2025Updated 3 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn☆27May 7, 2024Updated last year
- ☆119Oct 10, 2025Updated 5 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Transposon classification tools RFSB, part of TransposonUltimate☆14Mar 27, 2024Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 9 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Jun 26, 2024Updated last year
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 24, 2025Updated 8 months ago