Transposable Elements Representation Learner (TERL)
☆20Jun 2, 2025Updated last year
Alternatives and similar repositories for TERL
Users that are interested in TERL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 12, 2014Updated 11 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Jun 12, 2020Updated 6 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Scripts to help transposable elements consensus sequences curation☆11Feb 16, 2018Updated 8 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆114Nov 17, 2025Updated 11 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆118Jul 27, 2026Updated 3 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- Transposon annotation tool "resonaTE" (part of TransposonUltimate)☆18Mar 4, 2022Updated 4 years ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- meta-pipeline for repetitive element de-fragmentation and annotation☆29Oct 1, 2020Updated 6 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆16Aug 27, 2024Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.☆16Oct 6, 2026Updated 3 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago
- ☆11Updated this week
- ☆12Nov 23, 2020Updated 5 years ago
- ☆15Feb 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆38Jul 17, 2026Updated 3 months ago
- Neural network classification of TE☆104Apr 3, 2026Updated 7 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- All codes associated with MendelPeaG2P project☆13Mar 5, 2025Updated last year
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 7 years ago
- Extensive de-novo TE Annotator☆472Sep 10, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago